Bravo, Héctor Corrada: search on Z-Library

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1

Orchestrating high-throughput genomic analysis with Bioconductor

Huber, Wolfgang, Carey, Vincent J, Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S, Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, F

Journal:

Year:

2015

Language:

english

File:

PDF, 364 KB

english, 2015

2

Differential abundance analysis for microbial marker-gene surveys

Paulson, Joseph N, Stine, O Colin, Bravo, Héctor Corrada, Pop, Mihai

Journal:

Year:

2013

Language:

english

File:

PDF, 560 KB

english, 2013

3

Metastats: an improved statistical method for analysis of metagenomic data

Joseph N Paulson, Mihai Pop, Hector Corrada Bravo

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

4

Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

Tejasvi S Niranjan, Abby Adamczyk, Hector Corrada Bravo, Margaret A Taub…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

5

Overcoming bias and systematic errors in next generation sequencing data

Margaret A Taub,Hector Corrada Bravo,Rafael A Irizarry

Journal:

Genome Medicine

Year:

2010

Language:

english

File:

PDF, 702 KB

english, 2010

6

DNA Methylation Patterns in Cord Blood of Neonates Across Gestational Age

Braid, Susan M., Okrah, Kwame, Shetty, Amol, Corrada Bravo, Hector

Journal:

Nursing Research

Year:

2017

Language:

english

File:

PDF, 539 KB

english, 2017

7

Increased methylation variation in epigenetic domains across cancer types

Hansen, Kasper Daniel, Timp, Winston, Bravo, Héctor Corrada, Sabunciyan, Sarven, Langmead, Benjamin, McDonald, Oliver G, Wen, Bo, Wu, Hao, Liu, Yun, Diep, Dinh

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 3.21 MB

english, 2011

8

Ocean temperature forcing by aerosols across the Atlantic tropical cyclone development region

Evan, Amato T., Heidinger, Andrew K., Bennartz, Ralf, Bennington, Val, Mahowald, Natalie M., Corrada-Bravo, Hector, Velden, Christopher S., Myhre, Gunnar, Kossin, James P.

Journal:

Geochemistry, Geophysics, Geosystems

Year:

2008

Language:

english

File:

PDF, 207 KB

english, 2008

9

Privacy-Preserving Microbiome Analysis Using Secure Computation

Wagner, Justin, Paulson, Joseph N., Wang, Xiao, Bhattacharjee, Bobby, Bravo, Héctor Corrada

Journal:

Year:

2016

Language:

english

File:

PDF, 199 KB

english, 2016

10

BatchQC: interactive software for evaluating sample and batch effects in genomic data

Manimaran, Solaiappan, Selby, Heather Marie, Okrah, Kwame, Ruberman, Claire, Leek, Jeffrey T., Quackenbush, John, Haibe-Kains, Benjamin, Bravo, Hector Corrada, Johnson, W. Evan

Journal:

Year:

2016

Language:

english

File:

PDF, 137 KB

english, 2016

11

Epiviz: interactive visual analytics for functional genomics data

Chelaru, Florin, Smith, Llewellyn, Goldstein, Naomi, Bravo, Héctor Corrada

Journal:

Year:

2014

Language:

english

File:

PDF, 499 KB

english, 2014

12

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.

Olson, Nathan D., Kumar, M. Senthil, Li, Shan, Braccia, Domenick J., Hao, Stephanie, Timp, Winston, Salit, Marc L., Stine, O. Colin, Bravo, Hector Corrada

Journal:

Year:

2020

Language:

english

File:

PDF, 1.75 MB

english, 2020

13

Tackling the widespread and critical impact of batch effects in high-throughput data

Leek, Jeffrey T., Scharpf, Robert B., Bravo, Héctor Corrada, Simcha, David, Langmead, Benjamin, Johnson, W. Evan, Geman, Donald, Baggerly, Keith, Irizarry, Rafael A.

Journal:

Nature Reviews Genetics

Year:

2010

Language:

english

File:

PDF, 450 KB

english, 2010

14

Automated classification of bird and amphibian calls using machine learning: A comparison of methods

Miguel A. Acevedo, Carlos J. Corrada-Bravo, Héctor Corrada-Bravo, Luis J. Villanueva-Rivera, T. Mitchell Aide

Journal:

Ecological Informatics

Year:

2009

Language:

english

File:

PDF, 1.08 MB

english, 2009

15

Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors

Winston Timp,Hector Corrada Bravo,Oliver G McDonald,Michael Goggins…

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

16

Analysis and correction of compositional bias in sparse sequencing count data

Kumar, M. Senthil, Slud, Eric V., Okrah, Kwame, Hicks, Stephanie C., Hannenhalli, Sridhar, Corrada Bravo, Héctor

Journal:

Year:

2018

Language:

english

File:

PDF, 1.86 MB

english, 2018

17

Dual Transcriptome Profiling of Leishmania -Infected Human Macrophages Reveals Distinct Reprogramming Signatures

Fernandes, Maria Cecilia, Dillon, Laura A. L., Belew, Ashton Trey, Bravo, Hector Corrada, Mosser, David M., El-Sayed, Najib M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.35 MB

english, 2016

18

Gene expression anti-profiles as a basis for accurate universal cancer signatures

Héctor Corrada Bravo, Vasyl Pihur, Matthew McCall, Rafael A Irizarry, Jeffrey T Leek

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

19

Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis

Dinalankara, Wikum, Bravo, Héctor Corrada

Journal:

Cancer Informatics

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

20

Reply to: "A fair comparison"

Paulson, Joseph N, Bravo, Héctor Corrada, Pop, Mihai

Journal:

Year:

2014

Language:

english

File:

PDF, 364 KB

english, 2014

21

Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data

Héctor Corrada Bravo, Rafael A. Irizarry

Journal:

Year:

2010

Language:

english

File:

PDF, 588 KB

english, 2010

22

Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer

Sharmin, Mahfuza, Bravo, Héctor Corrada, Hannenhalli, Sridhar

Journal:

Year:

2016

Language:

english

File:

PDF, 1.08 MB

english, 2016

23

Epiviz: a view inside the design of an integrated visual analysis software for genomics

Florin Chelaru,Héctor Corrada Bravo

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

24

Bioinformatics of DNA

Heath, Lenwood S., Corrada Bravo, Hector, Caccamo, Mario, Schatz, Michael

Journal:

Proceedings of the IEEE

Year:

2017

Language:

english

File:

PDF, 246 KB

english, 2017

25

Metaviz: interactive statistical and visual analysis of metagenomic data

Wagner, Justin, Chelaru, Florin, Kancherla, Jayaram, Paulson, Joseph N, Zhang, Alexander, Felix, Victor, Mahurkar, Anup, Elmqvist, Niklas, Corrada Bravo, Héctor

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.84 MB

english, 2018

26

Simultaneous transcriptional profiling ofLeishmania majorand its murine macrophage host cell reveals insights into host-pathogen interactions

Dillon, Laura A. L., Suresh, Rahul, Okrah, Kwame, Corrada Bravo, Hector, Mosser, David M., El-Sayed, Najib M.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

27

A Model for Early Prediction of Facial Nerve Recovery After Vestibular Schwannoma Surgery

Rivas, Alejandro, Boahene, Kofi D., Bravo, Héctor Corrada, Tan, Marietta, Tamargo, Rafael J., Francis, Howard W.

Journal:

Otology & Neurotology

Year:

2011

Language:

english

File:

PDF, 253 KB

english, 2011

28

Heterogeneity of transcription factor binding specificity models within and across cell lines

Sharmin, Mahfuza, Bravo, Héctor Corrada, Hannenhalli, Sridhar

Journal:

Genome Research

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

29

metagenomeFeatures : An R package for working with 16S rRNA reference databases and marker-gene survey feature data

Olson, Nathan D, Shah, Nidhi, Kancherla, Jayaram, Wagner, Justin, Paulson, Joseph N, Corrada-Bravo, Hector, Kelso, Janet

Journal:

Year:

2019

Language:

english

File:

PDF, 348 KB

english, 2019

30

Epiviz File Server: Query, Transform and Interactively Explore Data from Indexed Genomic Files

Kancherla, Jayaram, Yang, Yifan, Chae, Hyeyun, Bravo, Hector Corrada, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 568 KB

2020

31

Intensity normalization improves color calling in SOLiD sequencing

Wu, Hao, Irizarry, Rafael A, Bravo, Héctor Corrada

Journal:

Year:

2010

Language:

english

File:

PDF, 138 KB

english, 2010

32

Metastats: an improved statistical method for analysis of metagenomic data

Joseph N Paulson, Mihai Pop, Hector Corrada Bravo

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

33

methylFlow: cell-specific methylation pattern reconstruction from high-throughput bisulfite-converted DNA sequencing

Dorri, Faezeh, Mendelowitz, Lee, Corrada Bravo, Héctor

Journal:

Year:

2016

Language:

english

File:

PDF, 552 KB

english, 2016

34

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Pop, Mihai, Paulson, Joseph N., Chakraborty, Subhra, Astrovskaya, Irina, Lindsay, Brianna R., Li, Shan, Bravo, Héctor Corrada, Harro, Clayton, Parkhill, Julian, Walker, Alan W., Walker, Richard I., Sa

Journal:

Year:

2016

Language:

english

File:

PDF, 3.62 MB

english, 2016

35

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation

Dillon, Laura A. L., Okrah, Kwame, Hughitt, V. Keith, Suresh, Rahul, Li, Yuan, Fernandes, Maria Cecilia, Belew, A. Trey, Corrada Bravo, Hector, Mosser, David M., El-Sayed, Najib M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

36

The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster

Nazario-Toole, Ashley E., Robalino, Javier, Okrah, Kwame, Corrada-Bravo, Hector, Mount, Stephen M., Wu, Louisa P.

Journal:

The Journal of Immunology

Year:

2018

Language:

english

File:

PDF, 1.76 MB

english, 2018

37

Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

Tejasvi S Niranjan, Abby Adamczyk, Hector Corrada Bravo, Margaret A Taub…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

38

A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data

Boca, Simina M., Bravo, Héctor Corrada, Caffo, Brian, Leek, Jeffrey T., Parmigiani, Giovanni

Journal:

Year:

2013

Language:

english

File:

PDF, 355 KB

english, 2013

39

Smooth quantile normalization

Hicks, Stephanie C, Okrah, Kwame, Paulson, Joseph N, Quackenbush, John, Irizarry, Rafael A, Bravo, Héctor Corrada

Journal:

Year:

2018

Language:

english

File:

PDF, 9.50 MB

english, 2018

40

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

Gunady, Mohamed K, Mount, Stephen M, Corrada Bravo, Héctor

Journal:

BMC Bioinformatics

Year:

2019

File:

PDF, 3.14 MB

2019

41

The partitioned LASSO-patternsearch algorithm with application to gene expression data

Weiliang Shi, Grace Wahba, Rafael A Irizarry, Hector Corrada Bravo, Stephen J Wright

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 340 KB

english, 2012

42

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, A

Journal:

Year:

2018

Language:

english

File:

PDF, 718 KB

english, 2018

43

Proactive Visual and Statistical Analysis of Genomic Data in Epiviz

Cui, Zhe, Kancherla, Jayaram, Chang, Kyle W, Elmqvist, Niklas, Bravo, Héctor Corrada, Hancock, John

Journal:

Year:

2019

Language:

english

File:

PDF, 1.19 MB

english, 2019

44

Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis

Tejasvi S Niranjan, Abby Adamczyk, Héctor Corrada Bravo, Margaret A Taub, Sarah J Wheelan, Rafael Irizarry, Tao Wang

Journal:

Year:

2011

Language:

english

File:

PDF, 7.29 MB

english, 2011

45

[ACM Press the 2007 ACM SIGMOD international conference - Beijing, China (2007.06.11-2007.06.14)] Proceedings of the 2007 ACM SIGMOD international conference on Management of data - SIGMOD '07 - Optimizing mpf queries

Bravo, Héctor Corrada, Ramakrishnan, Raghu

Year:

2007

Language:

english

File:

PDF, 1.14 MB

english, 2007

46

Proactive Visual and Statistical Analysis of Genomic Data in Epiviz

Cui, Zhe, Kancherla, Jayaram, Chang, Kyle W, Elmqvist, Niklas, Bravo, Héctor Corrada, Hancock, John

Journal:

Year:

2019

File:

PDF, 1.19 MB

2019

47

[IEEE 2019 IEEE Visualization in Data Science (VDS) - Vancouver, BC, Canada (2019.10.20-2019.10.20)] 2019 IEEE Visualization in Data Science (VDS) - Sherpa: Leveraging User Attention for Computational Steering in Visual Analytics

Cui, Zhe, Kancherla, Jayaram, Bravo, Hector Corrada, Elmqvist, Niklas

Year:

2019

Language:

english

File:

PDF, 2.30 MB

english, 2019

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